annotations
authenticate
configuration
dataset_collections
datasets
datatypes
extended_metadata
folder_contents
folders
forms
ftp_files
genomes
group_roles
group_users
groups
histories
history_contents
item_tags
job_files
jobs
lda_datasets
libraries
library_contents
metrics
page_revisions
pages
provenance
quotas
request_types
requests
roles
samples
search
tool_data
tool_shed_repositories
tools
users
visualizations
workflows
galaxy
app
config
galaxy.actions.admin
galaxy.config
galaxy.datatypes.assembly
galaxy.datatypes.binary
galaxy.datatypes.checkers
galaxy.datatypes.chrominfo
galaxy.datatypes.converters.bed_to_gff_converter
galaxy.datatypes.converters.bgzip
galaxy.datatypes.converters.fasta_to_len
galaxy.datatypes.converters.fasta_to_tabular_converter
galaxy.datatypes.converters.fastq_to_fqtoc
galaxy.datatypes.converters.fastqsolexa_to_fasta_converter
galaxy.datatypes.converters.fastqsolexa_to_qual_converter
galaxy.datatypes.converters.gff_to_bed_converter
galaxy.datatypes.converters.gff_to_interval_index_converter
galaxy.datatypes.converters.interval_to_bed_converter
galaxy.datatypes.converters.interval_to_bedstrict_converter
galaxy.datatypes.converters.interval_to_coverage
galaxy.datatypes.converters.interval_to_fli
galaxy.datatypes.converters.interval_to_interval_index_converter
galaxy.datatypes.converters.interval_to_tabix_converter
galaxy.datatypes.converters.lped_to_fped_converter
galaxy.datatypes.converters.lped_to_pbed_converter
galaxy.datatypes.converters.maf_to_fasta_converter
galaxy.datatypes.converters.maf_to_interval_converter
galaxy.datatypes.converters.pbed_ldreduced_converter
galaxy.datatypes.converters.pbed_to_lped_converter
galaxy.datatypes.converters.picard_interval_list_to_bed6_converter
galaxy.datatypes.converters.sam_to_bam
galaxy.datatypes.converters.vcf_to_interval_index_converter
galaxy.datatypes.converters.vcf_to_vcf_bgzip
galaxy.datatypes.converters.wiggle_to_array_tree_converter
galaxy.datatypes.converters.wiggle_to_simple_converter
galaxy.datatypes.coverage
galaxy.datatypes.data
galaxy.datatypes.display_applications.application
galaxy.datatypes.display_applications.parameters
galaxy.datatypes.display_applications.util
galaxy.datatypes.genetics
galaxy.datatypes.images
galaxy.datatypes.interval
galaxy.datatypes.metadata
galaxy.datatypes.ngsindex
galaxy.datatypes.qualityscore
galaxy.datatypes.registry
galaxy.datatypes.sequence
galaxy.datatypes.sniff
galaxy.datatypes.tabular
galaxy.datatypes.tracks
galaxy.datatypes.util
galaxy.datatypes.util.gff_util
galaxy.datatypes.util.image_util
galaxy.datatypes.xml
galaxy.eggs
galaxy.eggs.dist
galaxy.eggs.scramble
galaxy.exceptions
galaxy.external_services.actions
galaxy.external_services.parameters
galaxy.external_services.result_handlers.basic
galaxy.external_services.service
galaxy.forms.forms
galaxy.jobs
galaxy.jobs.actions
galaxy.jobs.actions.post
galaxy.jobs.deferred
galaxy.jobs.deferred.data_transfer
galaxy.jobs.deferred.manual_data_transfer
galaxy.jobs.deferred.pacific_biosciences_smrt_portal
galaxy.jobs.handler
galaxy.jobs.manager
galaxy.jobs.mapper
galaxy.jobs.runners
galaxy.jobs.runners.cli
galaxy.jobs.runners.condor
galaxy.jobs.runners.drmaa
galaxy.jobs.runners.local
galaxy.jobs.runners.lwr
galaxy.jobs.runners.tasks
galaxy.jobs.splitters.basic
galaxy.jobs.splitters.multi
galaxy.jobs.transfer_manager
galaxy.managers
galaxy.managers.api_keys
galaxy.managers.base
galaxy.managers.citations
galaxy.managers.collections
galaxy.managers.collections_util
galaxy.managers.context
galaxy.managers.folders
galaxy.managers.hdas
galaxy.managers.histories
galaxy.managers.lddas
galaxy.managers.libraries
galaxy.managers.roles
galaxy.managers.tags
galaxy.managers.workflows
galaxy.model
galaxy.model.custom_types
galaxy.model.item_attrs
galaxy.model.mapping
galaxy.model.migrate.check
galaxy.model.orm
galaxy.model.orm.logging_connection_proxy
galaxy.objectstore
galaxy.objectstore.s3_multipart_upload
galaxy.openid
galaxy.openid.providers
galaxy.quota
galaxy.sample_tracking.data_transfer
galaxy.sample_tracking.external_service_types
galaxy.sample_tracking.request_types
galaxy.sample_tracking.sample
galaxy.security
galaxy.security.validate_user_input
galaxy.tags
galaxy.tags.tag_handler
galaxy.tools
galaxy.tools.actions
galaxy.tools.actions.history_imp_exp
galaxy.tools.actions.metadata
galaxy.tools.actions.upload
galaxy.tools.actions.upload_common
galaxy.tools.data
galaxy.tools.deps
galaxy.tools.exception_handling
galaxy.tools.imp_exp
galaxy.tools.imp_exp.export_history
galaxy.tools.imp_exp.unpack_tar_gz_archive
galaxy.tools.parameters
galaxy.tools.parameters.basic
galaxy.tools.parameters.dynamic_options
galaxy.tools.parameters.grouping
galaxy.tools.parameters.input_translation
galaxy.tools.parameters.output
galaxy.tools.parameters.sanitize
galaxy.tools.parameters.validation
galaxy.tools.search
galaxy.tools.test
galaxy.tools.util
galaxy.tools.util.galaxyops
galaxy.tools.util.maf_utilities
galaxy.util
galaxy.util.aliaspickler
galaxy.util.backports
galaxy.util.backports.importlib
galaxy.util.bunch
galaxy.util.debugging
galaxy.util.expressions
galaxy.util.hash_util
galaxy.util.heartbeat
galaxy.util.inflection
galaxy.util.json
galaxy.util.lrucache
galaxy.util.none_like
galaxy.util.odict
galaxy.util.sanitize_html
galaxy.util.streamball
galaxy.util.template
galaxy.util.topsort
galaxy.visualization
galaxy.visualization.data_providers
galaxy.visualization.data_providers.basic
galaxy.visualization.data_providers.phyloviz
galaxy.visualization.data_providers.phyloviz.baseparser
galaxy.visualization.data_providers.phyloviz.newickparser
galaxy.visualization.data_providers.phyloviz.nexusparser
galaxy.visualization.data_providers.phyloviz.phyloxmlparser
galaxy.visualization.genome
galaxy.visualization.genomes
galaxy.visualization.tracks
galaxy.web
galaxy.web.base.controller
galaxy.web.base.controllers.admin
galaxy.web.form_builder
galaxy.web.framework
galaxy.web.framework.base
galaxy.web.framework.helpers
galaxy.web.framework.helpers.grids
galaxy.web.framework.middleware
galaxy.web.framework.middleware.profile
galaxy.web.framework.middleware.remoteuser
galaxy.web.framework.middleware.static
galaxy.web.framework.middleware.translogger
galaxy.web.framework.middleware.xforwardedhost
galaxy.web.framework.openid_manager
galaxy.web.params
galaxy.web.security
galaxy.webapps
galaxy.webapps.galaxy.api.annotations
galaxy.webapps.galaxy.api.authenticate
galaxy.webapps.galaxy.api.configuration
galaxy.webapps.galaxy.api.dataset_collections
galaxy.webapps.galaxy.api.datatypes
galaxy.webapps.galaxy.api.extended_metadata
galaxy.webapps.galaxy.api.folder_contents
galaxy.webapps.galaxy.api.folders
galaxy.webapps.galaxy.api.forms
galaxy.webapps.galaxy.api.genomes
galaxy.webapps.galaxy.api.group_roles
galaxy.webapps.galaxy.api.group_users
galaxy.webapps.galaxy.api.groups
galaxy.webapps.galaxy.api.histories
galaxy.webapps.galaxy.api.history_contents
galaxy.webapps.galaxy.api.item_tags
galaxy.webapps.galaxy.api.job_files
galaxy.webapps.galaxy.api.jobs
galaxy.webapps.galaxy.api.lda_datasets
galaxy.webapps.galaxy.api.libraries
galaxy.webapps.galaxy.api.library_contents
galaxy.webapps.galaxy.api.metrics
galaxy.webapps.galaxy.api.page_revisions
galaxy.webapps.galaxy.api.pages
galaxy.webapps.galaxy.api.provenance
galaxy.webapps.galaxy.api.quotas
galaxy.webapps.galaxy.api.request_types
galaxy.webapps.galaxy.api.requests
galaxy.webapps.galaxy.api.roles
galaxy.webapps.galaxy.api.samples
galaxy.webapps.galaxy.api.search
galaxy.webapps.galaxy.api.tool_data
galaxy.webapps.galaxy.api.tool_shed_repositories
galaxy.webapps.galaxy.api.users
galaxy.webapps.galaxy.api.visualizations
galaxy.webapps.galaxy.api.workflows
galaxy.webapps.galaxy.controllers
galaxy.webapps.galaxy.controllers.admin
galaxy.webapps.galaxy.controllers.admin_toolshed
galaxy.webapps.galaxy.controllers.async
galaxy.webapps.galaxy.controllers.dataset
galaxy.webapps.galaxy.controllers.error
galaxy.webapps.galaxy.controllers.external_service
galaxy.webapps.galaxy.controllers.external_services
galaxy.webapps.galaxy.controllers.forms
galaxy.webapps.galaxy.controllers.history
galaxy.webapps.galaxy.controllers.library
galaxy.webapps.galaxy.controllers.library_admin
galaxy.webapps.galaxy.controllers.library_common
galaxy.webapps.galaxy.controllers.mobile
galaxy.webapps.galaxy.controllers.page
galaxy.webapps.galaxy.controllers.request_type
galaxy.webapps.galaxy.controllers.requests
galaxy.webapps.galaxy.controllers.requests_admin
galaxy.webapps.galaxy.controllers.requests_common
galaxy.webapps.galaxy.controllers.root
galaxy.webapps.galaxy.controllers.tag
galaxy.webapps.galaxy.controllers.tool_runner
galaxy.webapps.galaxy.controllers.ucsc_proxy
galaxy.webapps.galaxy.controllers.user
galaxy.webapps.galaxy.controllers.workflow
galaxy.webapps.reports
galaxy.webapps.reports.app
galaxy.webapps.reports.buildapp
galaxy.webapps.reports.config
galaxy.webapps.reports.controllers
galaxy.webapps.reports.controllers.jobs
galaxy.webapps.reports.controllers.root
galaxy.webapps.reports.controllers.sample_tracking
galaxy.webapps.reports.controllers.system
galaxy.webapps.reports.controllers.users
galaxy.webapps.reports.controllers.workflows
galaxy.webapps.tool_shed
galaxy.webapps.tool_shed.api.repositories
galaxy.webapps.tool_shed.api.repository_revisions
galaxy.webapps.tool_shed.app
galaxy.webapps.tool_shed.buildapp
galaxy.webapps.tool_shed.config
galaxy.webapps.tool_shed.controllers
galaxy.webapps.tool_shed.controllers.admin
galaxy.webapps.tool_shed.controllers.hg
galaxy.webapps.tool_shed.controllers.repository
galaxy.webapps.tool_shed.controllers.repository_review
galaxy.webapps.tool_shed.controllers.upload
galaxy.webapps.tool_shed.controllers.user
galaxy.webapps.tool_shed.framework
galaxy.webapps.tool_shed.framework.middleware
galaxy.webapps.tool_shed.framework.middleware.hg
galaxy.webapps.tool_shed.framework.middleware.remoteuser
galaxy.webapps.tool_shed.model
galaxy.webapps.tool_shed.model.mapping
galaxy.webapps.tool_shed.model.migrate.check
galaxy.webapps.tool_shed.security
galaxy.webapps.tool_shed.util.hgweb_config
galaxy.webapps.tool_shed.util.shed_statistics
galaxy.workflow.modules
galaxy_utils
galaxy_utils.sequence.fasta
galaxy_utils.sequence.fastq
galaxy_utils.sequence.sequence
galaxy_utils.sequence.transform
galaxy_utils.sequence.vcf
log_tempfile
mimeparse
pkg_resources
psyco_full
tool_shed
tool_shed.galaxy_install
tool_shed.galaxy_install.grids.admin_toolshed_grids
tool_shed.galaxy_install.install_manager
tool_shed.galaxy_install.migrate.check
tool_shed.galaxy_install.migrate.common
tool_shed.grids.admin_grids
tool_shed.grids.repository_grids
tool_shed.grids.repository_review_grids
tool_shed.grids.util
tool_shed.tool_shed_registry
tool_shed.util.common_util
tool_shed.util.encoding_util
tool_shed.util.metadata_util
tool_shed.util.readme_util
tool_shed.util.review_util
tool_shed.util.shed_util_common
tool_shed.util.tool_dependency_util
tool_shed.util.tool_util
tool_shed.util.workflow_util
